Legal Medicine
Volume 12, Issue 6 , Pages 289-295 , November 2010

US forensic Y-chromosome short tandem repeats database

  • Jianye Ge

      Affiliations

    • Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
    • Institute of Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
    • Corresponding Author InformationCorresponding author at: Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA.
  • ,
  • Bruce Budowle

      Affiliations

    • Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
    • Institute of Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
  • ,
  • John V. Planz

      Affiliations

    • Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
    • Institute of Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
  • ,
  • Arthur J. Eisenberg

      Affiliations

    • Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
    • Institute of Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
  • ,
  • Jack Ballantyne

      Affiliations

    • National Center for Forensic Science, P.O. Box 162367, Orlando, FL 32816-2367, USA
  • ,
  • Ranajit Chakraborty

      Affiliations

    • Department of Forensic and Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA
    • Institute of Investigative Genetics, University of North Texas Health Science Center, Ft Worth, TX 76107, USA

Received 19 May 2010 ,Revised 26 July 2010 ,Accepted 29 July 2010.

References 

  1. Budowle B, Sinha SK, Lee HS, Chakraborty R. Utility of Y-chromosome STR haplotypes in forensic applications. Forensic Sci Rev. 2003;15:153–164
  2. Corach D, Risso LF, Marino F, Penacino G, Sala A. Routine Y-STR typing in forensic casework. Forensic Sci Int. 2001;118:131–135
  3. Dekairelle AF, Hoste B. Application of Y-STR pentaplex PCR (DYS19, DYS389I and II, DYS390, and DYS393) to sexual assault cases. Forensic Sci Int. 2001;118:122–125
  4. Honda K, Roewer L, de Knijff P. Male DNA typing from 25-year-old vaginal swabs using Y chromosomal STR polymorphisms in retrial request case. J Forensic Sci. 1999;44:868–872
  5. Jobling MA, Pandya A, Tyler-Smith C. The Y chromosome in forensic analysis and paternity testing. Int J Legal Med. 1997;110:118–124
  6. Kayser M, Cagliá A, Corach D, Fretwell N, Gehrig C, Graziosi G, et al. Evaluation of Y-chromosomal STRs: a multicenter study. Int J Legal Med. 1997;110:125–133
  7. Krenke BE, Fulmer PM, Driftmier Miller K, Sprecher CJ. The PowerPlex7 Y System. Profiles DNA. 2003;6:6–9
  8. Krenke BE, Viculis L, Richard ML, Prinz M, Milne SC, Ladd C, et al. Validation of a male-specific, 12-locus fluorescent Short Tandem Repeat (STR) multiplex. Forensic Sci Int. 2005;148:1–14
  9. Prinz M, Ishii A, Coleman A, Baum HJ, Shaler RC. Validation and casework application of a Y chromosome specific STR multiplex. Forensic Sci Int. 2001;120:177–188
  10. Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, et al. Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci. 2006;51(1):64–75
  11. NIST STRbase, http://www.cstl.nist.gov/biotech/strbase/y_str.htm.
  12. Budowle B, Adamowicz M, Aranda X, Barna C, Chakraborty R, Eisenberg AJ, et al. Twelve short tandem repeat loci Y chromosome haplotypes: genetic analysis on populations residing in North America. Forensic Sci Int. 2005;150(1):1–15
  13. Budowle B, Ge J, Chakraborty R. Basic principles for estimating the rarity of Y-STR haplotypes derived from forensic evidence. Eighteenth International Symposium on Human Identification 2007, Promega Corporation, Madison, Wisconsin; 2007. http://www.promega.com/ussymp18proc/default.htm.
  14. Budowle B, Ge J, Aranda X, Planz J, Eisenberg A, Chakraborty R. Texas population substructure and its impact on estimating the rarity of Y STR haplotypes from DNA evidence. J Forensic Sci. 2009;54:1016–1021
  15. Budowle B, Ge J, Aranda X, Low J, Lai C, Yee WH, et al. The effects of Asian population substructure on Y STR forensic analyses. Legal Med. 2009;11:64–69
  16. Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution. 1984;38:1358–1370
  17. Nei M. Molecular population genetics and evolution. North-Holland: Amsterdam; 1975;p. 149–150
  18. Excoffier L, Laval G, Schneider S. Arlequin Ver. 3.0: an integrated software package for population genetic data analysis. Evol Bioinform Online. 2005;1:47–50
  19. United States Bureau of the Census, http://www.census.gov.
  20. Budowle B, Shea B, Niezgoda S, Chakraborty R. CODIS STR loci data from 41 sample populations. J Forensic Sci. 2001;46:453–489
  21. Slatkin M. A measure of population subdivision based on microsatellite allele frequencies. Genetics. 1995;139:457–462
  22. Cavalli-Sforza LL, Menozzi P, Piazza A. The history and geography of human genes. Piazza, Princeton, NJ: Princeton University Press; 1994;
  23. Zarrabeitia MT, Riancho JA, Lareu MV, Leyva-Cobian F, Carracedo A. Significance of micro-geographical population structure in forensic cases: a Bayesian exploration. Int J Legal Med. 2003;117:302–305
  24. Beleza S, Alves S, González-Neira A, Lareu M, Amorim1 A, Carracedo A, et al. Extending STR markers in Y chromosome haplotypes. Int J Legal Med. 2003;117:27–33
  25. National Research Council. The evaluation of forensic DNA evidence. Washington, D.C.: National Academy Press; 1996.
  26. Clopper CJ, Pearson ES. The use of confidence or fiducial limits illustrated in the case of the binomial. Biometrika. 1934;26:404–413
  27. Singh KS, Bhalla V, Kaul L. The people of India: the schedule tribes. National Series, vol. 10. Anthropological Survey of India. Oxford Univ. Press; 1994. p. 3.

PII: S1344-6223(10)00117-3

doi: 10.1016/j.legalmed.2010.07.006

Legal Medicine
Volume 12, Issue 6 , Pages 289-295 , November 2010